option, or full option | description |
-h , --help | show this help message and exit
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-n STEM , --namestem=STEM |
Name of the files up the digits part, eg mydata in
mydata0000.edf
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-F FORMAT, --format=FORMAT |
Image File format, eg edf or bruker
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-f FIRST, --first=FIRST | Number of first file to process, default=0
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-l LAST, --last=LAST | Number of last file to process
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-o OUTFILE, --outfile=OUTFILE |
Output filename, gets extension .spt
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-d DARK, --darkfile=DARK |
Dark current filename, to be subtracted, default=None
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-D DARKOFFSET, --darkfileoffset=DARKOFFSET |
Constant to subtract from dark to avoid overflows,
default=100
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-s SPLINE, --splinefile=SPLINE |
Spline file for spatial distortion,
default=/data/opid11/inhouse/Frelon2K/spatial2k.spline |
-p PERFECT, --perfect_images=PERFECT |
Ignore spline Y|N, default=N
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-O FLOOD, --flood=FLOOD |
Flood file, default=None
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-t THRESHOLDS, --threshold=THRESHOLDS |
Threshold level, you can have several
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-S OMEGASTEP, --step=OMEGASTEP |
Step size in Omega when you have no header info
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-T OMEGA, --start=OMEGA |
Start position in Omega when you have no header info
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--ndigits=NDIGITS | Number of digits in file numbering [4] |
-P PADDING, --padding=PADDING |
Is the image number to padded Y|N, e.g. should 1 be
0001 or just 1 in image name, default=Y |
--OmegaFromHeader |
Read Omega values from headers [default]
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--OmegaOverRide |
Override Omega values from headers
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