Index

A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | W | X | Z

A

abscorr2() (in module XRStools.xrs_utilities), [1]
absCorrection() (in module XRStools.xrs_utilities), [1]
absolute_cross_section (class in XRStools.xrs_prediction)
absorptionCorrectProfiles() (XRStools.xrs_ComptonProfiles.AtomProfile method)
addch() (in module XRStools.xrs_utilities), [1]
alignment_image() (in module XRStools.xrs_read)
alignRCmonitor() (XRStools.xrs_scans.offDiaDataSet method)
alignRCmonitorCC() (XRStools.xrs_scans.offDiaDataSet method)
alterGROatomNames() (in module XRStools.xrs_calctools)
analyzer (class in XRStools.xrs_prediction)
analyzerAverage() (XRStools.xrs_extraction.edge_extraction method)
animation() (in module XRStools.xrs_read)
append() (XRStools.xrs_rois.roi_object method)
append2Scan_left() (in module XRStools.xrs_scans)
append2Scan_right() (in module XRStools.xrs_scans)
appendAtom() (XRStools.xrs_calctools.xyzMolecule method)
appendROIobject() (XRStools.roifinder_and_gui.roi_finder method)
appendScans() (in module XRStools.xrs_scans)
appendXESScans() (in module XRStools.xrs_scans)
apply_rois() (XRStools.xrs_scans.Scan method)
apply_rois_pw() (XRStools.xrs_scans.Scan method)
applyrois() (XRStools.xrs_scans.scan method)
applyrois_pw() (XRStools.xrs_scans.scan method)
assign() (XRStools.xrs_scans.Scan method)
AtomProfile (class in XRStools.xrs_ComptonProfiles)
axsfTrajParser() (in module XRStools.xrs_calctools)

B

beam (class in XRStools.xrs_prediction)
beta() (in module XRStools.xrs_calctools)
bidiag_reduction() (in module XRStools.xrs_utilities), [1]
binomial() (in module XRStools.xrs_calctools)
bootstrapCNNMF() (in module XRStools.xrs_utilities), [1]
boxParser() (in module XRStools.xrs_calctools)
bragg() (in module XRStools.xrs_utilities), [1]
braggd() (in module XRStools.xrs_utilities), [1]
break_down_det_image() (in module XRStools.xrs_rois)
broaden_diagram() (in module XRStools.xrs_calctools)
broaden_lin() (XRStools.xrs_calctools.erkale method)
(XRStools.xrs_calctools.stobe method)
broaden_linear() (in module XRStools.xrs_calctools)

C

calc_abs_cross_section() (XRStools.xrs_prediction.absolute_cross_section method)
calc_HF_profiles() (XRStools.xrs_prediction.compton_profiles method)
calc_num_scatterers() (XRStools.xrs_prediction.absolute_cross_section method)
calc_pure_HF_profiles() (XRStools.xrs_prediction.compton_profiles method)
calculateCOMlist() (in module XRStools.xrs_calctools)
calculateRIJhist() (in module XRStools.xrs_calctools)
catScans() (in module XRStools.xrs_scans)
catScansLong() (in module XRStools.xrs_scans)
catXESScans() (in module XRStools.xrs_scans)
changeOHBondLength() (in module XRStools.xrs_calctools)
changeOHBondlength() (XRStools.xrs_calctools.xyzBox method)
chisquare() (in module XRStools.xrs_calctools)
cixs_primo() (in module XRStools.xrs_utilities), [1]
cixs_secondo() (in module XRStools.xrs_utilities), [1]
cixs_terzo() (in module XRStools.xrs_utilities), [1]
cixsUBfind() (in module XRStools.xrs_utilities), [1]
cixsUBgetAngles_primo() (in module XRStools.xrs_utilities), [1]
cixsUBgetAngles_secondo() (in module XRStools.xrs_utilities), [1]
cixsUBgetAngles_terzo() (in module XRStools.xrs_utilities), [1]
cixsUBgetQ_primo() (in module XRStools.xrs_utilities), [1]
cixsUBgetQ_secondo() (in module XRStools.xrs_utilities), [1]
cixsUBgetQ_terzo() (in module XRStools.xrs_utilities), [1]
cla() (in module XRStools.xrs_prediction)
ComptonProfiles (class in XRStools.xrs_ComptonProfiles)
compute_matrix_elements() (in module XRStools.xrs_utilities), [1]
con2mat() (in module XRStools.xrs_utilities), [1]
constrained_mf() (in module XRStools.xrs_utilities), [1]
constrained_nnmf() (in module XRStools.xrs_utilities), [1]
constrained_svd() (in module XRStools.xrs_utilities), [1]
container (class in XRStools.xrs_rois)
convert_inds_to_matrix() (in module XRStools.xrs_rois)
convert_inds_to_xinds() (in module XRStools.xrs_rois)
convert_inds_to_yinds() (in module XRStools.xrs_rois)
convert_matrix_rois_to_inds() (in module XRStools.xrs_rois)
convert_matrix_to_redmatrix() (in module XRStools.xrs_rois)
convert_redmatrix_to_matrix() (in module XRStools.xrs_rois)
convert_redmatrix_to_matrix_my() (in module XRStools.xrs_rois)
convert_roi_matrix_to_masks() (in module XRStools.xrs_rois)
convg() (in module XRStools.xrs_calctools)
(in module XRStools.xrs_utilities), [1]
convtoprim() (in module XRStools.xrs_utilities), [1]
copy_edf_files() (XRStools.xrs_read.Hydra method)
(XRStools.xrs_read.read_id20 method)
count_OO_neighbors() (in module XRStools.xrs_calctools)
count_OO_neighbors_pbc() (in module XRStools.xrs_calctools)
countHbonds() (in module XRStools.xrs_calctools)
countHbonds_orig() (in module XRStools.xrs_calctools)
countHbonds_pbc() (in module XRStools.xrs_calctools)
create_diff_image() (in module XRStools.roifinder_and_gui)
(in module XRStools.xrs_scans)
create_rois() (in module XRS_swissknife)
create_sum_image() (in module XRStools.xrs_scans)
cut_broadspecs() (XRStools.xrs_calctools.erkale method)
cut_rawspecs() (XRStools.xrs_calctools.erkale method)
(XRStools.xrs_calctools.stobe method)
cut_spec() (in module XRStools.xrs_calctools)

D

define_lin_roi() (in module XRStools.roifinder_and_gui)
define_polygon_roi() (in module XRStools.roifinder_and_gui)
define_zoom_roi() (in module XRStools.roifinder_and_gui)
deglitchSignalMatrix() (XRStools.xrs_scans.offDiaDataSet method)
delE_dicedAnalyzerIntrinsic() (in module XRStools.xrs_utilities), [1]
delE_JohannAberration() (in module XRStools.xrs_utilities), [1]
delE_offRowland() (in module XRStools.xrs_utilities), [1]
delE_pixelSize() (in module XRStools.xrs_utilities), [1]
delE_sourceSize() (in module XRStools.xrs_utilities), [1]
delE_stressedCrystal() (in module XRStools.xrs_utilities), [1]
delete_scan() (XRStools.xrs_read.Fourc method)
(XRStools.xrs_read.Hydra method)
deleterois() (XRStools.roifinder_and_gui.roi_finder method)
deletescan() (XRStools.xrs_read.read_id20 method)
deleteTip4pCOM() (XRStools.xrs_calctools.xyzBox method)
detector (class in XRStools.xrs_prediction)
dspace() (in module XRStools.xrs_utilities), [1]
dump_ascii_file() (XRStools.xrs_read.Fourc method)
(XRStools.xrs_read.Hydra method)
dump_spectrum_ascii() (XRStools.xrs_read.Hydra method)

E

e2pz() (in module XRStools.xrs_utilities), [1]
EdfRead() (in module XRStools.xrs_fileIO)
edfread() (in module XRStools.xrs_utilities), [1]
edfread_test() (in module XRStools.xrs_utilities), [1]
edge_extraction (class in XRStools.xrs_extraction)
element() (in module XRStools.xrs_utilities), [1]
elossProfile() (in module XRStools.xrs_ComptonProfiles)
energy() (in module XRStools.xrs_utilities), [1]
energy_monoangle() (in module XRStools.xrs_utilities), [1]
erkale (class in XRStools.xrs_calctools)
estimate_shift() (in module XRStools.xrs_imaging)
estimate_shifts() (XRStools.xrs_imaging.imageset method)
estimate_xshift() (in module XRStools.xrs_imaging)
estimate_xshifts() (XRStools.xrs_imaging.imageset method)
estimate_yshift() (in module XRStools.xrs_imaging)
estimate_yshifts() (XRStools.xrs_imaging.imageset method)
exponential() (in module XRStools.xrs_calctools)
Extraction() (in module XRS_swissknife)

F

f() (in module XRStools.xrs_calctools)
fermi() (in module XRStools.xrs_utilities), [1]
filterDetErrors() (XRStools.xrs_scans.offDiaDataSet method)
find_center_of_mass() (in module XRStools.xrs_utilities), [1]
find_cw_rois() (XRStools.roifinder_and_gui.roi_finder method)
find_H2O_molecules() (in module XRStools.xrs_calctools)
find_pw_rois() (XRStools.roifinder_and_gui.roi_finder method)
findAllWaters() (in module XRStools.xrs_calctools)
findgroups() (in module XRStools.xrs_scans)
findMolecule() (in module XRStools.xrs_calctools)
findRCscans() (in module XRStools.xrs_scans)
findroisColumns() (in module XRStools.roifinder_and_gui)
FormulaProfile (class in XRStools.xrs_ComptonProfiles)
Fourc (class in XRStools.xrs_read)
fwhm() (in module XRStools.xrs_utilities), [1]

G

gamma() (in module XRStools.xrs_calctools)
gauss() (in module XRStools.xrs_calctools)
(in module XRStools.xrs_utilities), [1]
gauss1() (in module XRStools.xrs_calctools)
gauss_areanorm() (in module XRStools.xrs_calctools)
generality_doc (in module XRS_swissknife)
geometric() (in module XRStools.xrs_calctools)
get_absorption_correction() (XRStools.xrs_prediction.sample method)
get_all_input() (in module XRStools.xrs_prediction)
get_alpha() (XRStools.xrs_prediction.sample method)
get_asymmetry() (XRStools.xrs_extraction.valence_CP method)
get_atoms_by_name() (XRStools.xrs_calctools.xyzBox method)
(XRStools.xrs_calctools.xyzMolecule method)
get_atoms_from_molecules() (XRStools.xrs_calctools.xyzBox method)
get_auto_rois() (XRStools.roifinder_and_gui.roi_finder method)
get_auto_rois_eachdet() (in module XRStools.roifinder_and_gui)
(XRStools.roifinder_and_gui.roi_finder method)
get_average_densities() (XRStools.xrs_prediction.sample method)
get_beam_cross_section_area() (XRStools.xrs_prediction.beam method)
get_beam_height() (XRStools.xrs_prediction.beam method)
get_beam_height_cm() (XRStools.xrs_prediction.beam method)
get_beam_width() (XRStools.xrs_prediction.beam method)
get_beam_width_cm() (XRStools.xrs_prediction.beam method)
get_bend_r() (XRStools.xrs_prediction.analyzer method)
get_beta() (XRStools.xrs_prediction.sample method)
get_bounding_boxes() (XRStools.xrs_rois.roi_object method)
get_C_edges_av() (XRStools.xrs_extraction.HF_dataset method)
get_C_total() (XRStools.xrs_extraction.HF_dataset method)
get_compensation_factor() (XRStools.xrs_read.Fourc method)
get_concentrations() (XRStools.xrs_prediction.sample method)
get_copy() (XRStools.xrs_rois.roi_object method)
get_correctecProfiles() (XRStools.xrs_ComptonProfiles.FormulaProfile method)
get_data() (XRStools.xrs_read.Hydra method)
get_data_pw() (XRStools.xrs_read.Hydra method)
get_densities() (XRStools.xrs_prediction.sample method)
get_det_name() (XRStools.xrs_utilities.maxipix_det method), [1]
get_diced() (XRStools.xrs_prediction.analyzer method)
get_divergence() (XRStools.xrs_prediction.beam method)
get_E0() (XRStools.xrs_prediction.compton_profiles method)
get_eend() (XRStools.xrs_scans.scangroup method)
get_efficiency() (XRStools.xrs_prediction.analyzer method)
(XRStools.xrs_prediction.detector method)
get_eloss() (XRStools.xrs_read.Hydra method)
get_eloss_pw() (XRStools.xrs_scans.scan method)
get_elossProfiles() (XRStools.xrs_ComptonProfiles.AtomProfile method)
(XRStools.xrs_ComptonProfiles.FormulaProfile method)
(XRStools.xrs_ComptonProfiles.HFProfile method)
get_energy() (XRStools.xrs_prediction.detector method)
get_energy1() (XRStools.xrs_prediction.sample method)
get_energy2() (XRStools.xrs_prediction.sample method)
get_energy_in_keV() (XRStools.xrs_prediction.compton_profiles method)
get_energy_resolution() (XRStools.xrs_prediction.analyzer method)
get_energy_resolution_eV() (XRStools.xrs_prediction.analyzer method)
get_estart() (XRStools.xrs_scans.scangroup method)
get_formulas() (XRStools.xrs_prediction.sample method)
get_geo_informations() (in module XRStools.xrs_rois)
get_h2o_molecules() (XRStools.xrs_calctools.xyzBox method)
get_hbonds() (XRStools.xrs_calctools.xyzBox method)
get_HF_profiles() (XRStools.xrs_prediction.compton_profiles method)
get_hkl() (XRStools.xrs_prediction.analyzer method)
get_i0_intensity() (XRStools.xrs_prediction.beam method)
get_indices() (XRStools.xrs_rois.roi_object method)
get_J_total_av() (XRStools.xrs_extraction.HF_dataset method)
get_linear_rois() (XRStools.roifinder_and_gui.roi_finder method)
get_mask_d() (XRStools.xrs_prediction.analyzer method)
get_masks() (XRStools.xrs_rois.roi_object method)
get_material() (XRStools.xrs_prediction.analyzer method)
(XRStools.xrs_prediction.detector method)
get_maxediff() (XRStools.xrs_scans.scangroup method)
get_meanegridspacing() (XRStools.xrs_scans.scangroup method)
get_meanenergy() (XRStools.xrs_scans.scangroup method)
get_molar_masses() (XRStools.xrs_prediction.sample method)
get_murho() (XRStools.xrs_prediction.sample method)
get_num_of_MD_steps() (in module XRStools.xrs_utilities), [1]
get_number_of_rois() (XRStools.xrs_rois.roi_object method)
get_numofrois() (XRStools.xrs_scans.scan method)
(XRStools.xrs_scans.Scan method)
get_OO_neighbors() (XRStools.xrs_calctools.xyzBox method)
get_OO_neighbors_pbc() (XRStools.xrs_calctools.xyzBox method)
get_pixel_range() (XRStools.xrs_utilities.maxipix_det method), [1]
get_polygon_rois() (XRStools.roifinder_and_gui.roi_finder method)
get_polygon_rois_eachdet() (in module XRStools.roifinder_and_gui)
get_pzscale() (XRStools.xrs_extraction.valence_CP method)
get_q_values() (XRStools.xrs_read.Hydra method)
get_scan_number() (XRStools.xrs_scans.Scan method)
get_scannumber() (XRStools.xrs_scans.scan method)
get_scans_pw() (in module XRStools.xrs_read)
get_shape() (XRStools.xrs_prediction.sample method)
(XRStools.xrs_scans.Scan method)
(XRStools.xrs_scans.scan method)
get_size() (XRStools.xrs_prediction.detector method)
get_solid_angle() (XRStools.xrs_prediction.analyzer method)
get_spectrum() (XRStools.xrs_read.Hydra method)
get_state() (in module XRStools.xrs_calctools)
get_stoichiometry() (XRStools.xrs_ComptonProfiles.AtomProfile method)
get_stoichWeight() (XRStools.xrs_ComptonProfiles.FormulaProfile method)
get_thickness() (XRStools.xrs_prediction.analyzer method)
(XRStools.xrs_prediction.detector method)
(XRStools.xrs_prediction.sample method)
get_thomson_factor() (XRStools.xrs_prediction.thomson method)
get_tth() (XRStools.xrs_prediction.compton_profiles method)
(XRStools.xrs_prediction.sample method)
get_tths() (XRStools.xrs_read.Hydra method)
get_type() (XRStools.xrs_scans.Scan method)
(XRStools.xrs_scans.scan method)
(XRStools.xrs_scans.scangroup method)
get_x_indices() (XRStools.xrs_rois.roi_object method)
get_y_indices() (XRStools.xrs_rois.roi_object method)
get_zoom_rois() (in module XRStools.roifinder_and_gui)
(XRStools.roifinder_and_gui.roi_finder method)
getAtomicDensity() (in module XRStools.xrs_ComptonProfiles)
getAtomicWeight() (in module XRStools.xrs_ComptonProfiles)
getCoordinates() (XRStools.xrs_calctools.xyzAtom method)
(XRStools.xrs_calctools.xyzBox method)
(XRStools.xrs_calctools.xyzMolecule method)
getCoordinates_name() (XRStools.xrs_calctools.xyzMolecule method)
getDistance() (in module XRStools.xrs_calctools)
getDistancePbc() (in module XRStools.xrs_calctools)
getDistsFromMolecule() (in module XRStools.xrs_calctools)
getDistVector() (in module XRStools.xrs_calctools)
getDistVectorPbc() (in module XRStools.xrs_calctools)
geteloss() (XRStools.xrs_read.read_id20 method)
getGeometricCenter() (XRStools.xrs_calctools.xyzMolecule method)
getNorm() (XRStools.xrs_calctools.xyzAtom method)
getpenetrationdepth() (in module XRStools.xrs_utilities), [1]
getPeriodicTestBox() (in module XRStools.xrs_calctools)
getPeriodicTestBox_molecules() (in module XRStools.xrs_calctools)
getqvals() (XRStools.xrs_read.read_id20 method)
getqvals_energy() (XRStools.xrs_read.read_id20 method)
getrawdata() (XRStools.xrs_read.read_id20 method)
getrawdata_pixelwise() (XRStools.xrs_read.read_id20 method)
getRDF() (XRStools.xrs_calctools.xyzTrajectory method)
getspectrum() (XRStools.xrs_read.read_id20 method)
getTetraParameter() (in module XRStools.xrs_calctools)
(XRStools.xrs_calctools.xyzBox method)
getTranslVec() (in module XRStools.xrs_calctools)
getTranslVec_geocen() (in module XRStools.xrs_calctools)
gettransmission() (in module XRStools.xrs_utilities), [1]
gettths() (XRStools.xrs_read.read_id20 method)
groBoxParser() (in module XRStools.xrs_calctools)
groTrajecParser() (in module XRStools.xrs_calctools)
gumbel() (in module XRStools.xrs_calctools)

H

help() (in module XRS_swissknife)
HF_dataset (class in XRStools.xrs_extraction)
HFProfile (class in XRStools.xrs_ComptonProfiles)
HFspectrum() (in module XRS_swissknife)
hlike_Rwfn() (in module XRStools.xrs_utilities), [1]
householder() (in module XRStools.xrs_utilities), [1]
HRcorrect() (in module XRStools.xrs_ComptonProfiles)
(in module XRStools.xrs_utilities), [1]
Hydra (class in XRStools.xrs_read)
hypergeometric() (in module XRStools.xrs_calctools)

I

image (class in XRStools.xrs_imaging)
imageset (class in XRStools.xrs_imaging)
import_simo_style_rois() (XRStools.roifinder_and_gui.roi_finder method)
input_file_parser() (in module XRStools.xrs_prediction)
insertScan() (in module XRStools.xrs_scans)
interpolate_image() (in module XRStools.xrs_imaging)
interpolate_shift_images() (XRStools.xrs_imaging.imageset method)
interpolate_xshift_images() (XRStools.xrs_imaging.imageset method)
interpolate_yshift_images() (XRStools.xrs_imaging.imageset method)
interpolateMatrix() (XRStools.xrs_scans.offDiaDataSet method)

L

laplace() (in module XRStools.xrs_calctools)
lindhard_pol() (in module XRStools.xrs_utilities), [1]
list_duplicates() (in module XRStools.xrs_ComptonProfiles)
load() (XRStools.xrs_imaging.image method)
(XRStools.xrs_imaging.LRimage method)
(XRStools.xrs_imaging.imageset method)
(XRStools.xrs_scans.Scan method)
load_erkale_spec() (in module XRStools.xrs_calctools)
load_erkale_specs() (in module XRStools.xrs_calctools)
load_hdf5() (XRStools.xrs_scans.Scan method)
load_loop() (XRStools.xrs_read.Hydra method)
load_rois_fromh5() (in module XRStools.xrs_rois)
load_rois_fromMasksDict() (XRStools.xrs_rois.roi_object method)
load_scan() (XRStools.xrs_read.Fourc method)
(XRStools.xrs_read.Hydra method)
load_scans() (in module XRS_swissknife)
load_state_hdf5() (XRStools.xrs_imaging.oneD_imaging method)
(XRStools.xrs_read.Hydra method)
(XRStools.xrs_read.read_id20 method)
load_stobe_specs() (in module XRStools.xrs_calctools)
loadAXSFtraj() (XRStools.xrs_calctools.xyzTrajectory method)
loadelastic() (XRStools.xrs_read.read_id20 method)
loadelasticdirect() (XRStools.xrs_read.read_id20 method)
loadH5() (XRStools.xrs_rois.roi_object method)
loadhe3070() (XRStools.xrs_imaging.imageset method)
loadkimberlite() (XRStools.xrs_imaging.imageset method)
loadlong() (XRStools.xrs_read.read_id20 method)
loadlongdirect() (XRStools.xrs_read.read_id20 method)
loadloop() (XRStools.xrs_read.read_id20 method)
loadloopdirect() (XRStools.xrs_read.read_id20 method)
loadscan() (XRStools.xrs_read.read_id20 method)
loadscan_2Dimages() (XRStools.xrs_imaging.oneD_imaging method)
loadscandirect() (XRStools.xrs_read.read_id20 method)
logistic() (in module XRStools.xrs_calctools)
lognormal() (in module XRStools.xrs_calctools)
logseries() (in module XRStools.xrs_calctools)
LRimage (class in XRStools.xrs_imaging)

M

main() (in module XRStools.xrs_prediction)
(in module xrstools_imaging_example)
makegroup() (in module XRStools.xrs_scans)
makegroup_nointerp() (in module XRStools.xrs_scans)
makeprofile() (in module XRStools.xrs_utilities), [1]
makeprofile_comp() (in module XRStools.xrs_utilities), [1]
makeprofile_compds() (in module XRStools.xrs_utilities), [1]
makepzprofile() (in module XRStools.xrs_utilities), [1]
map_chamber_names() (in module XRStools.xrs_extraction)
mapShellNames() (in module XRStools.xrs_ComptonProfiles)
mat2con() (in module XRStools.xrs_utilities), [1]
maxipix_det (class in XRStools.xrs_utilities), [1]
merge_roi_objects_by_matrix() (in module XRStools.xrs_rois)
momtrans_au() (in module XRStools.xrs_utilities), [1]
momtrans_inva() (in module XRStools.xrs_utilities), [1]
mpr() (in module XRStools.xrs_utilities), [1]
mpr_compds() (in module XRStools.xrs_utilities), [1]
multinomial() (in module XRStools.xrs_calctools)
multiplyBoxPBC() (XRStools.xrs_calctools.xyzBox method)
multivariate_normal() (in module XRStools.xrs_calctools)
myEdfRead() (in module XRStools.xrs_fileIO)
myprho() (in module XRStools.xrs_utilities), [1]

N

negative_binomial() (in module XRStools.xrs_calctools)
NNMFcost() (in module XRStools.xrs_utilities), [1]
noncentral_chisquare() (in module XRStools.xrs_calctools)
noncentral_f() (in module XRStools.xrs_calctools)
nonzeroavg() (in module XRStools.xrs_utilities), [1]
norm_area() (XRStools.xrs_calctools.erkale method)
(XRStools.xrs_calctools.stobe method)
norm_max() (XRStools.xrs_calctools.erkale method)
normal() (in module XRStools.xrs_calctools)
normalizeSignals() (XRStools.xrs_scans.offDiaDataSet method)

O

odefctn() (in module XRStools.xrs_utilities), [1]
odefctn_CN() (in module XRStools.xrs_utilities), [1]
offDiaDataSet (class in XRStools.xrs_scans)
oneD_imaging (class in XRStools.xrs_imaging)
orderrois() (XRStools.xrs_read.read_id20 method)

P

pareto() (in module XRStools.xrs_calctools)
parseChemFormula() (in module XRStools.xrs_ComptonProfiles)
parseformula() (in module XRStools.xrs_utilities), [1]
parseXYZfile() (in module XRStools.xrs_calctools)
permutation() (in module XRStools.xrs_calctools)
plot_abs_cross_section() (XRStools.xrs_prediction.absolute_cross_section method)
plot_HF_profile() (XRStools.xrs_prediction.compton_profiles method)
plot_reflectivity() (XRStools.xrs_prediction.analyzer method)
plot_spec() (XRStools.xrs_calctools.erkale method)
plotimage() (XRStools.xrs_imaging.image method)
(XRStools.xrs_imaging.LRimage method)
plotLR() (XRStools.xrs_imaging.imageset method)
plotpenetrationdepth() (in module XRStools.xrs_utilities), [1]
plotSR() (XRStools.xrs_imaging.imageset method)
plottransmission() (in module XRStools.xrs_utilities), [1]
poisson() (in module XRStools.xrs_calctools)
popAtom() (XRStools.xrs_calctools.xyzMolecule method)
power() (in module XRStools.xrs_calctools)
PrepareEdfMatrix() (in module XRStools.xrs_fileIO)
PrepareEdfMatrix_TwoImages() (in module XRStools.xrs_fileIO)
primtoconv() (in module XRStools.xrs_utilities), [1]
print_citation_message() (in module XRStools.xrs_read)
print_length() (XRStools.xrs_read.Hydra method)
printlength() (XRStools.xrs_read.read_id20 method)
PyMcaEdfRead() (in module XRStools.xrs_fileIO)
PyMcaSpecRead() (in module XRStools.xrs_fileIO)
pz2e1() (in module XRStools.xrs_utilities), [1]
PzProfile() (in module XRStools.xrs_ComptonProfiles)

R

rand() (in module XRStools.xrs_calctools)
randint() (in module XRStools.xrs_calctools)
randn() (in module XRStools.xrs_calctools)
random() (in module XRStools.xrs_calctools)
random_integers() (in module XRStools.xrs_calctools)
random_sample() (in module XRStools.xrs_calctools)
ranf() (in module XRStools.xrs_calctools)
rayleigh() (in module XRStools.xrs_calctools)
read_id20 (class in XRStools.xrs_read)
read_just_first_scanimage() (XRStools.xrs_read.read_id20 method)
readbiggsdata() (in module XRStools.xrs_fileIO)
(in module XRStools.xrs_utilities), [1]
ReadEdf_justFirstImage() (in module XRStools.xrs_fileIO)
ReadEdfImages() (in module XRStools.xrs_fileIO)
ReadEdfImages_my() (in module XRStools.xrs_fileIO)
ReadEdfImages_PyMca() (in module XRStools.xrs_fileIO)
ReadEdfImages_TwoImages() (in module XRStools.xrs_fileIO)
readfio() (in module XRStools.xrs_utilities), [1]
readp01image() (in module XRStools.xrs_utilities), [1]
readp01scan() (in module XRStools.xrs_utilities), [1]
readp01scan_rep() (in module XRStools.xrs_utilities), [1]
readscan() (XRStools.xrs_read.read_id20 method)
readscan_new() (XRStools.xrs_read.read_id20 method)
ReadScanFromFile() (in module XRStools.xrs_fileIO)
readxas() (in module XRStools.xrs_calctools)
refine_pw_rois() (XRStools.roifinder_and_gui.roi_finder method)
removeBackgroundRoi() (XRStools.xrs_read.read_id20 method)
removeConstBack() (XRStools.xrs_scans.offDiaDataSet method)
removeCorePearsonAv() (XRStools.xrs_extraction.edge_extraction method)
removeElastic() (XRStools.xrs_scans.offDiaDataSet method)
removeElastic2() (XRStools.xrs_scans.offDiaDataSet method)
removeLinearBack() (XRStools.xrs_scans.offDiaDataSet method)
removePearsonAv() (XRStools.xrs_extraction.edge_extraction method)
removePearsonBack() (XRStools.xrs_scans.offDiaDataSet method)
removePolyCoreAv() (XRStools.xrs_extraction.edge_extraction method)
repair_h2o_molecules_pbc() (in module XRStools.xrs_calctools)
replaceSignalByConstant() (XRStools.xrs_scans.offDiaDataSet method)
roi_finder (class in XRStools.roifinder_and_gui)
roi_object (class in XRStools.xrs_rois)
run() (in module XRStools.xrs_prediction)

S

sample (class in XRStools.xrs_prediction)
sample() (in module XRStools.xrs_calctools)
save() (XRStools.xrs_imaging.image method)
(XRStools.xrs_imaging.LRimage method)
(XRStools.xrs_imaging.imageset method)
save_average_Sqw() (XRStools.xrs_extraction.edge_extraction method)
save_hdf5() (XRStools.xrs_scans.Scan method)
save_raw_data() (XRStools.xrs_read.read_id20 method)
save_state() (XRStools.xrs_read.read_id20 method)
save_state_hdf5() (XRStools.xrs_imaging.oneD_imaging method)
(XRStools.xrs_read.Hydra method)
(XRStools.xrs_read.read_id20 method)
Scan (class in XRStools.xrs_scans)
scan (class in XRStools.xrs_scans)
scangroup (class in XRStools.xrs_scans)
scatterPlot() (XRStools.xrs_calctools.xyzBox method)
(XRStools.xrs_calctools.xyzMolecule method)
seed() (in module XRStools.xrs_calctools)
set_bend_r() (XRStools.xrs_prediction.analyzer method)
set_diced() (XRStools.xrs_prediction.analyzer method)
set_energy() (XRStools.xrs_prediction.detector method)
set_hkl() (XRStools.xrs_prediction.analyzer method)
set_mask_d() (XRStools.xrs_prediction.analyzer method)
set_material() (XRStools.xrs_prediction.analyzer method)
(XRStools.xrs_prediction.detector method)
set_roiObj() (XRStools.xrs_read.Fourc method)
(XRStools.xrs_read.Hydra method)
(XRStools.xrs_read.read_id20 method)
set_size() (XRStools.xrs_prediction.detector method)
set_state() (in module XRStools.xrs_calctools)
set_thickness() (XRStools.xrs_prediction.analyzer method)
(XRStools.xrs_prediction.detector method)
setBoxLength() (XRStools.xrs_calctools.xyzBox method)
shift_roi_indices() (in module XRStools.xrs_rois)
shift_rois() (XRStools.xrs_rois.roi_object method)
shiftx() (XRStools.xrs_imaging.image method)
(XRStools.xrs_imaging.LRimage method)
shifty() (XRStools.xrs_imaging.image method)
(XRStools.xrs_imaging.LRimage method)
show_rois() (in module XRStools.roifinder_and_gui)
(XRStools.roifinder_and_gui.roi_finder method)
(XRStools.xrs_rois.roi_object method)
shuffle() (in module XRStools.xrs_calctools)
SpecRead() (in module XRStools.xrs_fileIO)
specread() (in module XRStools.xrs_utilities), [1]
spline2() (in module XRStools.xrs_calctools)
(in module XRStools.xrs_utilities), [1]
SqwPredict (class in XRStools.xrs_ComptonProfiles)
standard_cauchy() (in module XRStools.xrs_calctools)
standard_exponential() (in module XRStools.xrs_calctools)
standard_gamma() (in module XRStools.xrs_calctools)
standard_normal() (in module XRStools.xrs_calctools)
standard_t() (in module XRStools.xrs_calctools)
stobe (class in XRStools.xrs_calctools)
sum_specs() (XRStools.xrs_calctools.erkale method)
(XRStools.xrs_calctools.stobe method)
SumDirect() (XRStools.xrs_read.Fourc method)
(XRStools.xrs_read.Hydra method)
(XRStools.xrs_read.read_id20 method)
sumx() (in module XRStools.xrs_utilities), [1]
superR_fit_responses() (in module XRS_swissknife)
superR_recreate_rois() (in module XRS_swissknife)
superR_scal_deltaXimages() (in module XRS_swissknife)
svd_my() (in module XRStools.xrs_utilities), [1]
swap_indices_old_rois() (in module XRStools.xrs_rois)

T

test_roifinder() (in module XRStools.roifinder_and_gui)
there_is_a_valid_roi_at() (XRStools.xrs_read.Hydra method)
(XRStools.xrs_read.read_id20 method)
thomson (class in XRStools.xrs_prediction)
translateSelf() (XRStools.xrs_calctools.xyzAtom method)
(XRStools.xrs_calctools.xyzMolecule method)
trapz_weights() (in module XRStools.xrs_ComptonProfiles)
triangular() (in module XRStools.xrs_calctools)

U

unconstrained_mf() (in module XRStools.xrs_utilities), [1]
uniform() (in module XRStools.xrs_calctools)

V

valence_CP (class in XRStools.xrs_extraction)
vangle() (in module XRStools.xrs_utilities), [1]
vonmises() (in module XRStools.xrs_calctools)
vrot() (in module XRStools.xrs_utilities), [1]
vrot2() (in module XRStools.xrs_utilities), [1]

W

wald() (in module XRStools.xrs_calctools)
weibull() (in module XRStools.xrs_calctools)
windowSignalMatrix() (XRStools.xrs_scans.offDiaDataSet method)
write_rois_toh5() (in module XRStools.xrs_rois)
writeBox() (XRStools.xrs_calctools.xyzBox method)
writeClusters() (XRStools.xrs_calctools.xyzBox method)
writeFDMNESinput() (XRStools.xrs_calctools.xyzBox method)
writeFDMNESinput_file() (in module XRStools.xrs_calctools)
writeH2Oclusters() (XRStools.xrs_calctools.xyzBox method)
writeH5() (XRStools.xrs_rois.roi_object method)
writeMoleculeCluster() (XRStools.xrs_calctools.xyzBox method)
writeOCEAN_XESInput() (in module XRStools.xrs_calctools)
writeOCEANinput() (in module XRStools.xrs_calctools)
(XRStools.xrs_calctools.xyzBox method)
writeOCEANinput_full() (in module XRStools.xrs_calctools)
writeRandBox() (XRStools.xrs_calctools.xyzTrajectory method)
writeRelBox() (XRStools.xrs_calctools.xyzBox method)
writeRelXYZfile() (in module XRStools.xrs_calctools)
WriteScanToFile() (in module XRStools.xrs_fileIO)
writeWFN1waterInput() (in module XRStools.xrs_calctools)
writeXYZfile() (in module XRStools.xrs_calctools)
(XRStools.xrs_calctools.xyzMolecule method)
writeXYZtraj() (XRStools.xrs_calctools.xyzTrajectory method)
writeXYZtrajectory() (in module XRStools.xrs_calctools)

X

XRS_swissknife (module), [1], [2], [3], [4]
XRStools.__init__ (module)
XRStools.roifinder_and_gui (module)
XRStools.xrs_calctools (module)
XRStools.xrs_ComptonProfiles (module)
XRStools.xrs_extraction (module)
XRStools.xrs_fileIO (module)
XRStools.xrs_imaging (module)
XRStools.xrs_prediction (module)
XRStools.xrs_read (module)
XRStools.xrs_rois (module)
XRStools.xrs_scans (module)
XRStools.xrs_utilities (module), [1]
xrstools_imaging_example (module)
xyzAtom (class in XRStools.xrs_calctools)
xyzBox (class in XRStools.xrs_calctools)
xyzMolecule (class in XRStools.xrs_calctools)
xyzTrajecParser() (in module XRStools.xrs_calctools)
xyzTrajectory (class in XRStools.xrs_calctools)

Z

zipf() (in module XRStools.xrs_calctools)